PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G16087

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 838aa MW: 96402.7 Da PI: 7.1444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G16087	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	70	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YA ++GF+vr+ + ++s+++g++ r+fvCskeg++++ trtgC a ++v+++++gkw+++ + ++HnH+l Ro04_G16087 70 EFYTLYAARIGFKVRIGQLYRSRTDGSVSARRFVCSKEGFQTS--------------TRTGCAALIRVQRRDSGKWVIDLFLKNHNHDLG 145 6*************************************876..............79**************************995 PP
2	FAR1	66.3	7.8e-21	222	297	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++r+ + +sk +g+it+r+fvCs+eg++++ +r+gC a +++k++++g+w+v++l++ HnHel Ro04_G16087 222 QFYHAYAENTGFRIRIGQLFRSKLDGSITSRRFVCSREGFQHP--------------SRVGCGAFMRIKRQESGRWVVDRLDKVHNHELE 297 6*************************************999..............4899*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MESSSTHFTD MRSSDTDSKI EDCGNNFVNN AYPLRMLMPA MNIVSRDDEG ESILEPYVGL 60 AFDSADGARE FYTLYAARIG FKVRIGQLYR SRTDGSVSAR RFVCSKEGFQ TSTRTGCAAL 120 IRVQRRDSGK WVIDLFLKNH NHDLGPTEGN HSSILQQKTL TAKPVEVFHR PKSKLIQKVE 180 DGRPCPSGFI SAKRFKPNGD EMQSEVEPSA DLEFNSANEA YQFYHAYAEN TGFRIRIGQL 240 FRSKLDGSIT SRRFVCSREG FQHPSRVGCG AFMRIKRQES GRWVVDRLDK VHNHELESQQ 300 EVQKKNLSAS KKFIEEENDG LDDEDIVDIN NGILVKRRRE NHIGSDWYSV LFDYFQIKQA 360 EDTGFFYAVE VDNGGCMSIF WADGRSRFSC SQFGDAIIFD TSYRKGIYLV PFATFIGINH 420 NRQPVLLGCA LIADESEKSF TWLFQTWLRA MSGRCPLSII ADQDDVIQQA IIQVFPGTHH 480 RFSLWQIKAK ECEHLSSMHS SFKFEYEKCI NQSQTTDEFD TAWNSLLCRY GLKDNTWLKA 540 MYEKRRNWVP LYLRATFFAG IPLNGNIESF FGTRVNAQTP LMEFVPRYEK GLERRREEEL 600 KENFNCSILN AYLQTKEPVE EQCRRLYTLN IFRIFQKELL QSYSYLGFKI YEGVDIIRYL 660 VRKCGNGDDD KSTVTISASN HNVGCSCQMF EFEGVLCRHV LRVFQILDIK EIPPRYILRR 720 WRKNAEYGVP SYSESGGSPQ ELNASMVWSL REEAWKYIEA GATSLEKHKL AYEIMHEGRL 780 KLGCPPRVEY DYEFDNGNNA KSNSTAGNFN FLFSEGIDNA TQQKKFVGFD VSSCHHTP

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MESSSTHFTD MRSSDTDSKI EDCGNNFVNN AYPLRMLMPA MNIVSRDDEG ESILEPYVGL  60
AFDSADGARE FYTLYAARIG FKVRIGQLYR SRTDGSVSAR RFVCSKEGFQ TSTRTGCAAL  120
IRVQRRDSGK WVIDLFLKNH NHDLGPTEGN HSSILQQKTL TAKPVEVFHR PKSKLIQKVE  180
DGRPCPSGFI SAKRFKPNGD EMQSEVEPSA DLEFNSANEA YQFYHAYAEN TGFRIRIGQL  240
FRSKLDGSIT SRRFVCSREG FQHPSRVGCG AFMRIKRQES GRWVVDRLDK VHNHELESQQ  300
EVQKKNLSAS KKFIEEENDG LDDEDIVDIN NGILVKRRRE NHIGSDWYSV LFDYFQIKQA  360
EDTGFFYAVE VDNGGCMSIF WADGRSRFSC SQFGDAIIFD TSYRKGIYLV PFATFIGINH  420
NRQPVLLGCA LIADESEKSF TWLFQTWLRA MSGRCPLSII ADQDDVIQQA IIQVFPGTHH  480
RFSLWQIKAK ECEHLSSMHS SFKFEYEKCI NQSQTTDEFD TAWNSLLCRY GLKDNTWLKA  540
MYEKRRNWVP LYLRATFFAG IPLNGNIESF FGTRVNAQTP LMEFVPRYEK GLERRREEEL  600
KENFNCSILN AYLQTKEPVE EQCRRLYTLN IFRIFQKELL QSYSYLGFKI YEGVDIIRYL  660
VRKCGNGDDD KSTVTISASN HNVGCSCQMF EFEGVLCRHV LRVFQILDIK EIPPRYILRR  720
WRKNAEYGVP SYSESGGSPQ ELNASMVWSL REEAWKYIEA GATSLEKHKL AYEIMHEGRL  780
KLGCPPRVEY DYEFDNGNNA KSNSTAGNFN FLFSEGIDNA TQQKKFVGFD VSSCHHTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1 family protein