PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G16391
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 250aa    MW: 28251.4 Da    PI: 5.5565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G16391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
      Ro04_G16391  5 KGPWTTEEDQVLISYIQNYGHGNWRALPKHAGLLRCGKSCRLRWINYL 52
                     79******************************99************97 PP
2Myb_DNA-binding48.22.5e-1558109148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++      W++Ia++++ gRt++++k+ w+++l
      Ro04_G16391  58 RGNFTREEEDAIINLHEMLGNRltcmhIWSAIAARLP-GRTDNEIKNVWHTHL 109
                      89***********************************.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGLKKGPWTT EEDQVLISYI QNYGHGNWRA LPKHAGLLRC GKSCRLRWIN YLRPDIKRGN  60
FTREEEDAII NLHEMLGNRL TCMHIWSAIA ARLPGRTDNE IKNVWHTHLK KRLLKNNKTT  120
SPTCSTSNLT NQSADPEYSN KANINHHNQV NSSDDVSSVD NASATTGQDM IKDEKIEFNA  180
PFPEIDDSFW SEALSADNSG DIPLEFLEGT NDNSTHPQFP VTSNIDDGMN FWYDLFIRAG  240
DCGTPELPGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-65MYB family protein