PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G18068

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CAMTA

Protein Properties

Length: 953aa MW: 107801 Da PI: 7.7038

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G18068	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.7	1.6e-51	90	206	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e k rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcy Ro04_G18068 90 EEaKGRWLRPNEIHAILYNYKYFTINVKPVNLPPSGRIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCY 187 45499******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le+ivlvhy+e++ Ro04_G18068 188 WLLDKSLEHIVLVHYRETQ 206 **************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence
ISWSNKLHDG KVINALLQLE RPKVSRIGRS ISAASGLLSC NHIHLAALTS PPALELLEKV 60 SNLRMDKPLV GSEIHGFHTM QDLDVETIME EAKGRWLRPN EIHAILYNYK YFTINVKPVN 120 LPPSGRIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDSP 180 TFVRRCYWLL DKSLEHIVLV HYRETQEVGS PGTPVNSNSN SSSVSDPSAP WRLSEELDSG 240 ANNSYYGGEN ELLEPGGGLT VSNHERRLHD INTLEWEELL VTCDPNGGFD LQNQVVGNGT 300 ISGGTCGIPA EVSSFDNLPN PSARTGNIHF NLPDSNYVTL EGEVNSNAQR RDSVVKGPCD 360 SLDILVNDGL RSQDSFGRWI NQIMIDSPGS VDDQIPSSVP EQMFIITDVS PAWAFSNEKT 420 KILITGFFHQ EFLDLAKFNL LCICGDVSIP VEYVQVGVYR CFIPPHVPTL VNLFISLDGH 480 KPISQVLNFE YRSPVMSNSI VPSEENKWEE FRLQMRLANL LFSSSKSLNV VSSKVSPNAL 540 KEAKQFSQRT AHISNRWQYL IKSIEDNNPP LPLAKDHLFE LILKNRLKDW LLEKVLESSK 600 TKEYDVHGQG VVHLCAILGY AWAVHMFSWS GLSLDFRDRR GWTALHWAAY HGREKMVAVL 660 LSAGAKPNLV TDPTSENPGG CTSADLASMN GYDGLAAYLS EKALVEQFKD MSIAGNVSGS 720 LQTSTDCYGS SEILSEEDLY LKDTLTAYRT AADAAARIQA AFRENALKLK TKAVQFSIPE 780 DEARSIIAAL KIQHAFRHYD TRKKMAAAAH IQYRFRTWKI RQEFLNMRRQ AVKIQAAFRA 840 FQTRKQYRKI LWGVGVLEKA VLRWRLKRKG LRGLQVDPIE ASGDEKQESD TEEDFYRKSR 900 KQAEERVEKS VVRVQAMFRS KKAQEEYRRM KLTHNEAKLE YEDFLDPDNN MLG

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence

ISWSNKLHDG KVINALLQLE RPKVSRIGRS ISAASGLLSC NHIHLAALTS PPALELLEKV  60
SNLRMDKPLV GSEIHGFHTM QDLDVETIME EAKGRWLRPN EIHAILYNYK YFTINVKPVN  120
LPPSGRIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDSP  180
TFVRRCYWLL DKSLEHIVLV HYRETQEVGS PGTPVNSNSN SSSVSDPSAP WRLSEELDSG  240
ANNSYYGGEN ELLEPGGGLT VSNHERRLHD INTLEWEELL VTCDPNGGFD LQNQVVGNGT  300
ISGGTCGIPA EVSSFDNLPN PSARTGNIHF NLPDSNYVTL EGEVNSNAQR RDSVVKGPCD  360
SLDILVNDGL RSQDSFGRWI NQIMIDSPGS VDDQIPSSVP EQMFIITDVS PAWAFSNEKT  420
KILITGFFHQ EFLDLAKFNL LCICGDVSIP VEYVQVGVYR CFIPPHVPTL VNLFISLDGH  480
KPISQVLNFE YRSPVMSNSI VPSEENKWEE FRLQMRLANL LFSSSKSLNV VSSKVSPNAL  540
KEAKQFSQRT AHISNRWQYL IKSIEDNNPP LPLAKDHLFE LILKNRLKDW LLEKVLESSK  600
TKEYDVHGQG VVHLCAILGY AWAVHMFSWS GLSLDFRDRR GWTALHWAAY HGREKMVAVL  660
LSAGAKPNLV TDPTSENPGG CTSADLASMN GYDGLAAYLS EKALVEQFKD MSIAGNVSGS  720
LQTSTDCYGS SEILSEEDLY LKDTLTAYRT AADAAARIQA AFRENALKLK TKAVQFSIPE  780
DEARSIIAAL KIQHAFRHYD TRKKMAAAAH IQYRFRTWKI RQEFLNMRRQ AVKIQAAFRA  840
FQTRKQYRKI LWGVGVLEKA VLRWRLKRKG LRGLQVDPIE ASGDEKQESD TEEDFYRKSR  900
KQAEERVEKS VVRVQAMFRS KKAQEEYRRM KLTHNEAKLE YEDFLDPDNN MLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein