PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G19702
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 259aa    MW: 29983.7 Da    PI: 5.8021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G19702genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-1522110599
                  -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s  l++ +l +p +f +++  +++   +  l+++d+    W++++   +  ++++l++GW+eF +++ L +g+++vF++dgr++f   +++f+k
  Ro04_G19702  22 I--SPGLNTEILKIPQNFQRHIlnELS--DKALLKIKDSVYCAWNIRV--HQIESGIYLKEGWREFLEDHSLVDGETLVFRYDGRMQF--SIQIFDK 110
                  4..77889999*******988876433..455799999999*******..8888899*******************************..9999997 PP
2B348.51.6e-151802551798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +p +f ++h   ++++  ++l++++gr+W+v++    +s ++ l++GW eF  an+++ gD++ F+l++r   + vv+++ 
  Ro04_G19702 180 AVPVDFSRKHL--PQGHYSIVLKNSKGRKWNVNV--VPNSMTVQLSSGWGEFRCANRINFGDICRFELVKR--NTIVVHIIP 255
                  68999*99995..336778***************..*******************************9875..445888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MERGTSENGI EETKEPSFCT IISPGLNTEI LKIPQNFQRH ILNELSDKAL LKIKDSVYCA  60
WNIRVHQIES GIYLKEGWRE FLEDHSLVDG ETLVFRYDGR MQFSIQIFDK NHVERVNFDY  120
LENETHENPA FANNSANKHI ELNGGEEDYQ DSEEEEAATL PKSEFPSFTS IIRPRGYHVA  180
VPVDFSRKHL PQGHYSIVLK NSKGRKWNVN VVPNSMTVQL SSGWGEFRCA NRINFGDICR  240
FELVKRNTIV VHIIPKWED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-17B3 family protein