PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G19844
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 473aa    MW: 52563.2 Da    PI: 4.9866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G19844genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15149237197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k+++ps+v++  +l lp  f+++h g   ++k + lede+g+++e k+     + +  l++GW++F   ++L  gD vvF+ +g  ef  +v ++
  Ro04_G19844 149 FVKEMLPSHVSRGFWLGLPTAFCRNHIGA--SDKIIWLEDETGEKFETKY--LAAKMG--LSAGWRGFSIVHNLLKGDAVVFQKVGACEF--KVYIV 237
                  89************************544..5678***************..666644..9**********************8887777..66655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MPTLNLFTNV PVDAVIASDI LKDATKAVAK IIGKPESYVM ILLNGSVPIA FAGTEEPAAY  60
GELISIGGIG PSVNGKLSST IAEILETKLS IDSSRFYIKF YDVQVGTADS ESHRPKRLKR  120
LTEEESEKPS VLKRAEEFAA ELPLRYPSFV KEMLPSHVSR GFWLGLPTAF CRNHIGASDK  180
IIWLEDETGE KFETKYLAAK MGLSAGWRGF SIVHNLLKGD AVVFQKVGAC EFKVYIVKPN  240
GSDEVNCARD HAAETQMVAV TTSSPISSDL SEANTEDILN YIDNYEDDAP ESLEGVGVSE  300
IAVPFREVTC IEKFKVIFNG LNINSEIPKP IVKKYYKLCC SQNAYLHEKL VEPLNCKLVV  360
GLISETINIA DAIKACKITT AESDILTWDK TLQASEIFGM KVSFLRTRLT ELASLASEAQ  420
RYKDSRLERE QREAEYRAML ANYLEVKDEA DREESQKLVK LDVCFKEVTK APW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-38B3 family protein