PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G19918

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 420aa MW: 46247.2 Da PI: 7.2419

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G19918	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.9	4.9e-34	201	259	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ Ro04_G19918 201 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 259 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MDGREELRNK TDRTPSSSAP MANSTLFSDH EIPMIPNSYS ALSGLFDMPS SEAERGSLGF 60 MDLLGNPDYA PLFDFGTQTT PSSSMMIMMP PQQHKEPQAF PSPSPVSSAL LPESTTNSEA 120 LNSSATAPTT PNSSSISSSS NEAHAANNNE DQTTTKAADE EEDADQDPEK TQKQLKPKKK 180 NQKRQREPRF AFMTKSEVDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA GCGVKKRVER 240 SSDDPSIVVT TYEGQHTHPS PITPRGSMGI APLSSELTGH MFSGVSSGYG VPHHQYQQQQ 300 QQQHLHSYIY NSSPSLNITT TATNSSYGFN PASFPGLFQE RYNNIGGHPT NSAASNLLRD 360 HGLLQDMLPS QIRKEAKEEY LHILRMSKRQ FIKHVGQEKT IGARVPPVPQ PSTVSATGVL

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MDGREELRNK TDRTPSSSAP MANSTLFSDH EIPMIPNSYS ALSGLFDMPS SEAERGSLGF  60
MDLLGNPDYA PLFDFGTQTT PSSSMMIMMP PQQHKEPQAF PSPSPVSSAL LPESTTNSEA  120
LNSSATAPTT PNSSSISSSS NEAHAANNNE DQTTTKAADE EEDADQDPEK TQKQLKPKKK  180
NQKRQREPRF AFMTKSEVDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA GCGVKKRVER  240
SSDDPSIVVT TYEGQHTHPS PITPRGSMGI APLSSELTGH MFSGVSSGYG VPHHQYQQQQ  300
QQQHLHSYIY NSSPSLNITT TATNSSYGFN PASFPGLFQE RYNNIGGHPT NSAASNLLRD  360
HGLLQDMLPS QIRKEAKEEY LHILRMSKRQ FIKHVGQEKT IGARVPPVPQ PSTVSATGVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	8e-57	WRKY family protein