PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G21367

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 1333aa MW: 143573 Da PI: 4.3303

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G21367	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ rH r H Ro04_G21367 20 HVCHKCGWPFPNPHPSARHRRAH 42 79******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1333 aa Download sequence
MDHQDLRKTH SLGNEGHGVH VCHKCGWPFP NPHPSARHRR AHKKICGTID GYKLVGSEVN 60 TNMSVSDGEH SDEDPKTPGP KVLERSIYEK GSGLIGEASI KSDDAVFSDA VAEFSDSGYA 120 AGTGEGLEDA QESAPNVERV ANNDLNAIQF HNDGGTTGST GNQFRGWLST SDISSKTSSI 180 SDGITEGSKV LLGDSNGSEN DLHPIKHETV TDASEDIKKT DAPDSMIESC LTSVDQEAEV 240 RGITAVNLDR NISSKTSSIS DRRTEESNVL LGDRNGSADD LHPIKYEMVT DASEDIKKTD 300 ATDSMIESCL TSVDQDTEVR GITATTLNRN MIFPNEATGE TVEGASKLEG TDEMTSEYVR 360 DDEVVPSERE HSDGFDMHIP QIDLPPQVES VAHVNTSVDT AERKVDDTDG IHYISPGRLI 420 ESCNGKEDGN ANVHVVSVPD DMHVVEDPVR MLEDFRNHKG KQLDQFNSLD SWEQFDDKEN 480 DIKQPVFKEN LNIFQSSHLS GGTVVSPHTH DLEDSLEWDV GSSKPMINRV PVEGEANMSQ 540 SEIKMSENQS SDELGAPADA VMPQIAKTYM VGFPEGQESY DKSIESLQVN YAAGDAGIDK 600 TTHSVGMDDN EKDGNCDGSG ESGDHSRKGP AEENLVANPV ATVQSAGDRY ESQINPAANF 660 AASDAGIDKT TQSVGLDDNE KDGNCDGSGE SGDHSIKGPA EENLVANPIA TVQSAGDRYE 720 SQINPAANLH KDDDDGDYEK GVIEKCNIIG DAGYNEKAET SNLFGDDKSK GATENFFSRD 780 PANNLESVSC LSKLQVNPVV NLHEGGDGAG DCEKDKAKKC DIIGNNGDHE KAEKYVSTGD 840 DFSKRSTDET FAEDPKTSSE SIISLSDFQV QSGKKLPDVD GSADHDEGEI EKCVISGNES 900 VEGSLEENIL VKSELTPESS SNLNDCKAVV GDATDGSRME LVETRHLDSS SNSWMVGGKI 960 VSDTQQDVLE NEIACNDKIE KEVDAGAAAG SDHGHNVESF QKSLEDHGMK EPGFSALDTE 1020 SSVQSFIASE GSGSREFHAV ASGFNSQSLP EEGDNNLVRQ HPSSSAVDVS VDSNSQTDSL 1080 EANWGSVSVL SMQSDAVIDA EAVHTNSQAS LEGTDLKKSK AECESQYSDK SDMFEAPSFM 1140 TLVEHRGGDD QKATGSEILT AVQNPEQPKP ASLQTTGWFP SMTHVVNESQ GRKKNEEIIA 1200 KVTNWSTGKQ HTPLKSLLGE ASLASKAKSP NQNESQAPTL PKDDKATKVG PVTTTVNSIL 1260 NPESPTGQAA KKENAKEWNS PARYPSDTKS EKKKVKGRSW VQFVCCASIP LYCPCEEELK 1320 VLKHKNTMKR KAE

Sequence ? help Back to Top

Protein Sequence Length: 1333 aa Download sequence

MDHQDLRKTH SLGNEGHGVH VCHKCGWPFP NPHPSARHRR AHKKICGTID GYKLVGSEVN  60
TNMSVSDGEH SDEDPKTPGP KVLERSIYEK GSGLIGEASI KSDDAVFSDA VAEFSDSGYA  120
AGTGEGLEDA QESAPNVERV ANNDLNAIQF HNDGGTTGST GNQFRGWLST SDISSKTSSI  180
SDGITEGSKV LLGDSNGSEN DLHPIKHETV TDASEDIKKT DAPDSMIESC LTSVDQEAEV  240
RGITAVNLDR NISSKTSSIS DRRTEESNVL LGDRNGSADD LHPIKYEMVT DASEDIKKTD  300
ATDSMIESCL TSVDQDTEVR GITATTLNRN MIFPNEATGE TVEGASKLEG TDEMTSEYVR  360
DDEVVPSERE HSDGFDMHIP QIDLPPQVES VAHVNTSVDT AERKVDDTDG IHYISPGRLI  420
ESCNGKEDGN ANVHVVSVPD DMHVVEDPVR MLEDFRNHKG KQLDQFNSLD SWEQFDDKEN  480
DIKQPVFKEN LNIFQSSHLS GGTVVSPHTH DLEDSLEWDV GSSKPMINRV PVEGEANMSQ  540
SEIKMSENQS SDELGAPADA VMPQIAKTYM VGFPEGQESY DKSIESLQVN YAAGDAGIDK  600
TTHSVGMDDN EKDGNCDGSG ESGDHSRKGP AEENLVANPV ATVQSAGDRY ESQINPAANF  660
AASDAGIDKT TQSVGLDDNE KDGNCDGSGE SGDHSIKGPA EENLVANPIA TVQSAGDRYE  720
SQINPAANLH KDDDDGDYEK GVIEKCNIIG DAGYNEKAET SNLFGDDKSK GATENFFSRD  780
PANNLESVSC LSKLQVNPVV NLHEGGDGAG DCEKDKAKKC DIIGNNGDHE KAEKYVSTGD  840
DFSKRSTDET FAEDPKTSSE SIISLSDFQV QSGKKLPDVD GSADHDEGEI EKCVISGNES  900
VEGSLEENIL VKSELTPESS SNLNDCKAVV GDATDGSRME LVETRHLDSS SNSWMVGGKI  960
VSDTQQDVLE NEIACNDKIE KEVDAGAAAG SDHGHNVESF QKSLEDHGMK EPGFSALDTE  1020
SSVQSFIASE GSGSREFHAV ASGFNSQSLP EEGDNNLVRQ HPSSSAVDVS VDSNSQTDSL  1080
EANWGSVSVL SMQSDAVIDA EAVHTNSQAS LEGTDLKKSK AECESQYSDK SDMFEAPSFM  1140
TLVEHRGGDD QKATGSEILT AVQNPEQPKP ASLQTTGWFP SMTHVVNESQ GRKKNEEIIA  1200
KVTNWSTGKQ HTPLKSLLGE ASLASKAKSP NQNESQAPTL PKDDKATKVG PVTTTVNSIL  1260
NPESPTGQAA KKENAKEWNS PARYPSDTKS EKKKVKGRSW VQFVCCASIP LYCPCEEELK  1320
VLKHKNTMKR KAE