PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G21548
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 222aa    MW: 25457.2 Da    PI: 9.803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G21548genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-0882127555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er RR++ ++++  L +llP+      +K +K  i+++A+  I++Lq
  Ro04_G21548  82 HMINERMRREKQKQSYLALHSLLPNG-----TKSDKNWIVQMATTNIQQLQ 127
                  7799********************97.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MDRFILEVLE GDFLWNENPP VLNQTAFVPY NPEAELGQPP SGSNSMNMNK RMVQFLRKSC  60
PPSTARIETG ENANSKVKGF CHMINERMRR EKQKQSYLAL HSLLPNGTKS DKNWIVQMAT  120
TNIQQLQRCK EELRKRNMEL ESILGKDGSV KWSKLRLRVA NPTSGVDSML EVLKCLQSLG  180
LKTRNIQSSF SAHEFSVEIE FENKVVSSLF LHTHTHKHNP FI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-39bHLH family protein