PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G22286
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 257aa    MW: 28669.4 Da    PI: 6.799
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G22286genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.93.4e-2891178291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  Ro04_G22286  91 FYNAYATHVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHALTP 178
                  ******************************************9988..9**************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MTAVEFTVDG DVDGEVVGSS AEMEGSRAGD ENETGGSSVE GAFQLGQEDK IILDSSGRNI  60
IPSAIPVVSV VSADEPYVGQ EFETEAAAHA FYNAYATHVG FIIRVSKLSR SRRDGSAIGR  120
ALVCNKEGYR MPDKREKIVR QRAETRVGCR AMILVRKVSS GKWVVTKFVK EHTHALTPGK  180
GRRDCIYDQY PNEHDKIREL SQQLAVEKKR AATYKRHLDL IFEHIEEHNE SLSKKIQHIV  240
DSVKEIEGKE QQVLMLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-95FAR1 family protein