PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G22394
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 85aa    MW: 9476.15 Da    PI: 10.9493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G22394genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.1e-231863449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  n ++ qvtfskRr g++KKA+EL++LC+aeva+i fs+ +k++ +
  Ro04_G22394 18 TNATRLQVTFSKRRSGLFKKASELCTLCGAEVAIIAFSPGNKVHSF 63
                 6999****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MARKKTKGRQ KLEMVKMTNA TRLQVTFSKR RSGLFKKASE LCTLCGAEVA IIAFSPGNKV  60
HSFGHPCVKT LIQRFDLSGT ANFEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-37M-type_MADS family protein