PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G23119

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 253aa MW: 28632.4 Da PI: 9.3547

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G23119	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2.1e-50	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++++ ++ Ro04_G23119 14 LPPGFRFHPTDEELVLQYLKRKVFSCPLPA-SIIPEVEVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIVASrGN 107 79**************************.89***********54...46799******************************998577 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy g+ p+g +tdW+mheyrl Ro04_G23119 108 QVVGMKKTLVFYGGKPPHGARTDWIMHEYRL 138 78*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MEKLNFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVFSCP LPASIIPEVE VCKADPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYG 120 GKPPHGARTD WIMHEYRLVL AEDKNKSSQS PVAPPVNNWV LCRIFLKKRG SGKNEEEQVQ 180 GQPCNVDQRV AKKPRISRPV FYDFMTKDRA NLSLAPCSSS SGSSGVTDVV SSETEEHEES 240 SSCNSLPYFR RKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-99	NAC family protein