PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G23344
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 208aa    MW: 23700.4 Da    PI: 6.4145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G23344genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
      Ro04_G23344 22 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                     79********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MYCGMMAAHM GWGIIEEEGW RKGPWTSEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNSTTAY PNHTSTDQEQ GFFYSMLNNG  120
NVSYVAEASS NEDNFLWDGL WNLEDVHGNF NTPACATGKA STFHNFVCHQ NDPRFSKLSK  180
PELWIDASLT DGGRDLAGDN CNPMHPKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-51MYB family protein