PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G23784
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 148aa    MW: 15925 Da    PI: 10.3035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G23784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.9e-193670135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C  Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Ro04_G23784 36 CFDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
                 99******************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MLDPNDKLSD QGSESEDMNL KNPNEGSSEE GQKRTCFDCG TSKTPLWRGG PAGPKSLCNA  60
CGIRSRKKRR AILGINKSGG GGADDNRKGK KSSSSNKQIG DGLKQRLLAL GRDVLMQRST  120
VERQRRKLGE EEQAAVLLMA LSYGSVSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16791KKRRAILGINKSGGGGADDNRKGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-48GATA family protein