PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G23789
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 696aa    MW: 76049.1 Da    PI: 6.6794
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G23789genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.81.6e-25212262152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk
  Ro04_G23789 212 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQK 262
                  79*******************.*****************************9 PP
2Myb_DNA-binding35.62.2e-11214262146
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qk
      Ro04_G23789 214 RVVWSVELHQQFVGAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQK 262
                      678*********************************************8 PP
3Response_reg76.78.3e-26341421109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y ev+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll+ i  e  +lp+i+++a + ++ + + +  Ga 
   Ro04_G23789  34 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAEIALSLLRENKngYDVVISDVHMPDMDGFKLLEYIGLEM-DLPVIMMSADDGKSVVMKGVTHGAC 128
                   89*********************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
   Ro04_G23789 129 DYLIKPVRIEALKN 142
                   **********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MNLNNGRSMS TASSSGAWKS ADAVSDQFPA GLRVLVVDDD PTCLMILEKM LRTCLYEVTK  60
CNRAEIALSL LRENKNGYDV VISDVHMPDM DGFKLLEYIG LEMDLPVIMM SADDGKSVVM  120
KGVTHGACDY LIKPVRIEAL KNIWQHVVRK KKNEWKDVEQ SGSVDEGDRQ QKPCEEPDYS  180
SSANEGNWKN SKKRKDEDED GEDRDDTSTL KKPRVVWSVE LHQQFVGAVN QLGIDKAVPK  240
KILELMNVPG LTRENVASHL QKNSPHKLME QKYRLYLRRL SGVSQHQSNL NNSFISSQEA  300
SFGAMSSLNG IDLQTLAVAG QLPAQSLATL QAAGLGRSTS KSGIPMPLVD QRNLFSFENP  360
KLRFAEGQQH HSSGKPMNLL HGIPTTMEAK QLANLHQSAQ SLGAVNMQVN PHGVQNSSLY  420
MIGQPQSRGQ ILNETTGTHV PRLPSSIGQP MVSNGIPSGV LGGRSGISDG GRGTGYNSVP  480
QNSSMMNFPL NNTAELPGNS YTLGSTQGMS SLTPKGSFPE EVNSEIKRSG GFVPSYDIFN  540
ELHQHKSNDW NLQNVGLTFD ASHHTNSVHG SLDSSGLVHQ GFSSSQRTAQ SRNPSNVGKA  600
MFPMGASTDH GHVQNTCQHL SNGLIVDNTV RIKSERHSDA TQNNFFHDQF GQEDLMSALL  660
KQQQGGVGPS ENEFDFDGYS LDNIPGFSSL HAVVLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.20.0ARR-B family protein