PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G25113

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 330aa MW: 36052.9 Da PI: 6.8324

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G25113	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	15	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+++++ ++ fC+ ++ +lC +C +++H H+ Ro04_G25113 15 KPCDTCKSSPAAVFCRADSAYLCLTCDSKIHCAnklasrHQ 55 68****************************95545666666 PP
2	zf-B_box	27.1	8.5e-09	56	102	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Ro04_G25113 56 RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 102 5789*****************************66899999999986 PP
3	CCT	70.1	5.7e-24	257	300	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ Ro04_G25113 257 REARVMRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 300 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGIQAGWSLP GLTPKPCDTC KSSPAAVFCR ADSAYLCLTC DSKIHCANKL ASRHQRVWMC 60 EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERV PVEPFLDSAE SIVKSTSVLN 120 ALVPNGDISF IKVDDADADT LLIPNLNFSS KFVDALDIKP GDMFFPEMES LLDFHYPNPI 180 HNTSSGMDSV VPVQPDPIPP PPSVSSSSLD VGVVPDGNSL SDISYPFVRN VSHNGIEPGV 240 PVSATASQAT QLCGVDREAR VMRYREKRKN RKFQKTIRYA SRKAYAETRP RIKGRFAKRT 300 ETETDVMDRF YSSAPGTYMT DAQYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-90	CO-like family protein