PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G25749

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 213aa MW: 25334.7 Da PI: 11.0374

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G25749	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5e-11	78	125	2	47
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 g+WT eEd +l+ +++++G g +Wk ++ g+ R+ k+c rw + Ro04_G25749 78 GPWTREEDYILLSYIQEHGHGrgHWKNLPKNAGLQRSIKSCGMRWTNN 125 79*******************************************986 PP
2	Myb_DNA-binding	33.3	1.1e-10	132	175	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++ E+++++++++ +G+ W+ Ia+ + gRt++q+++ w++ Ro04_G25749 132 RESFSLGEQDIIIRLHTIYGNM-WSVIAKSLR-GRTDNQIRNLWHT 175 5678889*************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MFFCSSHFFY VYFFLIFYSF HIPSSFFFFF FQFLCKPSTI SFLRFQQKSV FLINQPSLKF 60 RLHLPLWQAL LTIILNIGPW TREEDYILLS YIQEHGHGRG HWKNLPKNAG LQRSIKSCGM 120 RWTNNLSPHL KRESFSLGEQ DIIIRLHTIY GNMWSVIAKS LRGRTDNQIR NLWHTRIRIR 180 LVQMGIDPRT PRLPRADLTL PPAPLHHHPP IVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	2e-43	MYB family protein