PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G26212
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31662.3 Da    PI: 6.7135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G26212genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.27.5e-051243356
                 HHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 33 LAkklgLterqVkvWFqNrRakek 56
                 +A++l+L+ +++++W qN +++++
  Ro04_G26212  1 MARQLHLQPKKITYWIQNYKTRKR 24
                 699******************987 PP
2START53.48e-1817127471174
                  CT-TT-SEEEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
        START  71 qWdetlakaetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                   W et ++ +++ ++  +    +al+ m+ae+ ++splvp R+  f+Ry rq  ++ wv+v   ++   + p+++s+ R    pS +li+ +++g+sk
  Ro04_G26212 171 LWPETSRDSAVVLTVGVNeifnEALHEMTAEFHLPSPLVPvREHHFIRYFRQYYKDLWVVVYADLSAVFQDPTTKSYRR----PS-CLIQALPDGYSK 263
                  7999999999999998889999****************************************99998877776899988....77.89********** PP

                  EEEEE-EE--S CS
        START 164 vtwvehvdlkg 174
                  vtwve++++++
  Ro04_G26212 264 VTWVENAEVDD 274
                  ********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MARQLHLQPK KITYWIQNYK TRKRVKFSRG ESDALREEIA KLHAKLKRCE EALANTTCLV  60
CGGPSIANKG LDCRSQVPVA GPNVEKGKSP LEFPEAFQQM REDFLHTKDG QDLVAKLVVA  120
AMEELVMMAC EGAPLWIPAK NDVPPNQPDI LNNVEYLRIF SRDPNHTPKK LWPETSRDSA  180
VVLTVGVNEI FNEALHEMTA EFHLPSPLVP VREHHFIRYF RQYYKDLWVV VYADLSAVFQ  240
DPTTKSYRRP SCLIQALPDG YSKVTWVENA EVDDEDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.13e-49HD-ZIP family protein