PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G26259
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 341aa    MW: 38330.4 Da    PI: 6.6788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G26259genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
      Ro04_G26259 29 RGPWTVEEDLALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding51.23e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Ro04_G26259  82 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MDVKPGRVSN TIKSSHEEEE DDVMMDLRRG PWTVEEDLAL MNYIANHGEG RWNSLARCAG  60
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH LPGRTDNEIK  120
NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL WMPRLVERIQ AAASSAAAST APSSSITSTI  180
TTAPNPSYHF NNNFQSMGAG HVALQQATLI GSNNDLAASY TTPENSSTGA SSDSFGNQVS  240
PVSELTDYYT TMSVNNNNPS PMEYFQAPNP HHQVGYRDSM TSPSGYVFNQ GGLNSHSFQA  300
ASAPEQNNNG QWGMDGGDFS DNLWNVEESD MWFLQQQLGN I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.13e-94MYB family protein