PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G26848

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 425aa MW: 46243.1 Da PI: 6.5942

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G26848	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4.1e-34	83	137	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Ro04_G26848 83 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 137 79****************************************************8 PP
2	Myb_DNA-binding	77.3	2.1e-24	85	136	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++vdav+qlGg+ t+ktI+rtmg kg+tl+++ks++qky+ Ro04_G26848 85 RLRWTAELHERFVDAVTQLGGPdkaTPKTIMRTMGvKGLTLYHLKSHLQKYR 136 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MPWLVLLIFS LTHSNSQTHF SNPLTSPSLL CSFRGSEPRI PGSLGMYSAM HSLPLDGHGE 60 FSGSLDGTNL PGDACLVLTT DPKPRLRWTA ELHERFVDAV TQLGGPDKAT PKTIMRTMGV 120 KGLTLYHLKS HLQKYRLGKQ SFKESTENSK DVGIAASCIA ESQDTGSSAT SSRVIAQDLN 180 EYVIFPISLL MLISFFLSSC NCGSSNSGYQ VTEALRVQME VQRRLHEQLE VQRRLQLRIE 240 AQGKYLQSIL EKACKALNDQ AATAAGLEAA KEELSELAIK VSSDCQGMAP LDTIKMLSLS 300 EIAAVIDNKS APNVLARIGN CSVDSCLTST GSPGSPMGMS TLAAAMKKRQ RPFFGNGDSL 360 PLEGNMRQEV EWMMMWGSLY FHNITTGFEA AEPAQFFSVM PLLLSVTFIA DVGVLMLIQP 420 GYSNS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MPWLVLLIFS LTHSNSQTHF SNPLTSPSLL CSFRGSEPRI PGSLGMYSAM HSLPLDGHGE  60
FSGSLDGTNL PGDACLVLTT DPKPRLRWTA ELHERFVDAV TQLGGPDKAT PKTIMRTMGV  120
KGLTLYHLKS HLQKYRLGKQ SFKESTENSK DVGIAASCIA ESQDTGSSAT SSRVIAQDLN  180
EYVIFPISLL MLISFFLSSC NCGSSNSGYQ VTEALRVQME VQRRLHEQLE VQRRLQLRIE  240
AQGKYLQSIL EKACKALNDQ AATAAGLEAA KEELSELAIK VSSDCQGMAP LDTIKMLSLS  300
EIAAVIDNKS APNVLARIGN CSVDSCLTST GSPGSPMGMS TLAAAMKKRQ RPFFGNGDSL  360
PLEGNMRQEV EWMMMWGSLY FHNITTGFEA AEPAQFFSVM PLLLSVTFIA DVGVLMLIQP  420
GYSNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-117	G2-like family protein