PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G27248
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 166aa    MW: 18413.1 Da    PI: 8.6285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G27248genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-0556951054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 + R +++ +++  L++l+ +      +K + a++L +A++YI+ L
  Ro04_G27248 56 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 95
                 6788899999999*****999.....9****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MIVSSLCNAS SRFSVEEGID VRKMTEHKRS PCSVDQTSVT SLASKRHKTD LSMSTKERKE  60
KLGERIVALQ QLVSPYGKTD TASVLLEAMD YIRFLHEQVK VLSAPYLQST PTAKMQELEP  120
YSLRSRGLCL VPVDCTIGVA QSNGADIWAP IKTTSPKFEN VTSNFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.34e-68bHLH family protein