PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G27337
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 253aa    MW: 28431.6 Da    PI: 5.6479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G27337genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
      Ro04_G27337 14 KGPWTTEEDQVLISYIQNYGHGNWRALPKHAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      Ro04_G27337  67 RGNFTREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGRAPCCEKM GLKKGPWTTE EDQVLISYIQ NYGHGNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLLKNN  120
KTTSPTCSTS NLTSQSADPE YVNFESPTRQ TSMSPQPSSS DDVSSVNNAS AATGQDMIKD  180
EKIEFNAPFP EIDDSFWSEA LSADNSGYIP LEFLEGTNDN STHPQFPVTS NIDDGMNFWY  240
DLFIRAGDGG TPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-74MYB family protein