PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G27452
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 231aa    MW: 26203.1 Da    PI: 5.9261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G27452genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-135496754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Ro04_G27452 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 96
                 57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MDNIGDEYKH YWETNMFLQT EELDSWGLDE AFSGYYDSSS PDGAASSMAS KNIVSERNRR  60
KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIQELHDQE RRIQGEIMDL ESGKSKKNGM  120
GSSDFEQELP VLLRSKKKKM EQLYDSGGSR TSSIEVLELR VTYMGEKTVV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITAFSGRVLK TVFIEVITLL LLLVLFQSVN S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-89bHLH family protein