PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36174
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 242aa    MW: 27565 Da    PI: 7.0549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36174genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.85.9e-5591341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+v+yLk++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++
  Ro04_G36174   9 LPPGFRFHPTDEELIVYYLKNQATSRPCPV-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIHS-GSK 104
                  79****************************.89***************99999*****************************************.99* PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg+kk Lvfykgr pkg ktdW+mheyrl
  Ro04_G36174 105 YVGVKKALVFYKGRPPKGIKTDWIMHEYRL 134
                  ****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MEANGSSGLP PGFRFHPTDE ELIVYYLKNQ ATSRPCPVSI IPEVDIYKFD PWQLPEKAEF  60
GENEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIH SGSKYVGVKK ALVFYKGRPP  120
KGIKTDWIMH EYRLTANDVK EEQMLNFPRT CSISSLLDMD YLGPISQLLN DNSTYDFHNM  180
LATSAGLGSV QTFQFGDQQN QIPYQSTDSA KFQVMMNQTS SPFMNQPLFV NPAYNNMNGL  240
NH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-91NAC family protein