PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36356

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 157aa MW: 17893.5 Da PI: 7.3483

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36356	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.8	6.9e-24	23	70	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien rqvt+skRr g+lKKAeELSvLCd e aviifs tgkl e Ro04_G36356 23 KKIENLPARQVTYSKRRRGLLKKAEELSVLCDCEYAVIIFSATGKLCE 70 689*******************************************87 PP
2	K-box	25.3	6.5e-10	97	153	14	70
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 + +lq++ +L ke+ re+R++ GedLe L++ eLq+Le+++ + +++ ++K+ Ro04_G36356 97 SLELQHDRIRLGKELADKSRELRQMNGEDLEGLNIDELQKLEEEIAGGQNRVLQTKT 153 44566777777788888889****************************999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MVGGVFWEQL AMMKTTSKKI TIKKIENLPA RQVTYSKRRR GLLKKAEELS VLCDCEYAVI 60 IFSATGKLCE SSSSSTNDVI ARYQSHIENV ERLDQPSLEL QHDRIRLGKE LADKSRELRQ 120 MNGEDLEGLN IDELQKLEEE IAGGQNRVLQ TKTLQIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	7e-48	MIKC_MADS family protein