PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36357
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 104aa    MW: 12247.6 Da    PI: 10.8328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36357genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.5e-241158148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 k+ien   rqvt+skRr g+lKKAeELSvLCd e av+ifs tgkl e
  Ro04_G36357 11 KKIENLPARQVTYSKRRRGLLKKAEELSVLCDCEYAVVIFSATGKLCE 58
                 689*******************************************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MKTTSKKITI KKIENLPARQ VTYSKRRRGL LKKAEELSVL CDCEYAVVIF SATGKLCESS  60
SSRYLSGHLF LLLLLVRIQK YNRDMCQYIR RRRPLWKYSI SSIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-20MIKC_MADS family protein