PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36384

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 761aa MW: 86548.8 Da PI: 7.4969

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36384	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+ +Ak++GFs+r+++++ + + +t+r+f+C + g+++ + ++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel Ro04_G36384 53 EFYCGFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPAEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNVHNHELL 146 6*************9998874556679***************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MSEGTSRGME DVSQDDIGTV EETAEDSILS RQTCVNLVPF VGQRFVSQEA AYEFYCGFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKMQRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRITGFSNV HNHELLKSNQ VSLLPAYCSI SPDDKSRICM YAKAGMSVRQ 180 MLRLMELEKG VKLGCLTFSE IDVRNLLQSF RNVNRDNDAI DLIAMCKKMK DEDPNFKYEF 240 KIDGHNRLEH IAWSYGSSIQ LYEEFGDAVV FDTTYRLDAY DMLLGIWLGV DNHGMTCFFG 300 CVLLRDENMQ SFSWALKTFL GFMKGKAPQT TLSDHNMWLK EAIAVVMPQT KHAFCIWYIV 360 EKFSEWFSVL LGSRYDDWKA EFHQLYNLHS VEDFEERWME MVNRYGLHAN KHVISLYALR 420 SFWALAYLRH YFFAGMTNTC QSDSINAFIQ RFLSAVSQLD RFVEQVRFPC SFVFSCSAFV 480 LLPCCSTSFP YLAESSLLQA ADIVNYSDRA GAKQKLQQKL PSLKTGSPIE SHAASVLTPY 540 AFGKLQEELV LAPQYASLLV DEGCFQVRHH TQVDGGCKVI WVPSQEHISC SCCQFEFTGI 600 LCRHVLRVLS NNNCFRIPDQ YLPARWCRVS SSSTNTFQTA TMKDKSEKIQ ILESMASTLV 660 AESIETGERL DAACQQIAVV LSRVKDLPRT TRNAIDGASN CPPDLMNLPD VEDDNGVVRF 720 TIGNSHESVA SGKLKERRPK ETVESNRKRR HCAGPCCLSV Q

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MSEGTSRGME DVSQDDIGTV EETAEDSILS RQTCVNLVPF VGQRFVSQEA AYEFYCGFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKMQRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRITGFSNV HNHELLKSNQ VSLLPAYCSI SPDDKSRICM YAKAGMSVRQ  180
MLRLMELEKG VKLGCLTFSE IDVRNLLQSF RNVNRDNDAI DLIAMCKKMK DEDPNFKYEF  240
KIDGHNRLEH IAWSYGSSIQ LYEEFGDAVV FDTTYRLDAY DMLLGIWLGV DNHGMTCFFG  300
CVLLRDENMQ SFSWALKTFL GFMKGKAPQT TLSDHNMWLK EAIAVVMPQT KHAFCIWYIV  360
EKFSEWFSVL LGSRYDDWKA EFHQLYNLHS VEDFEERWME MVNRYGLHAN KHVISLYALR  420
SFWALAYLRH YFFAGMTNTC QSDSINAFIQ RFLSAVSQLD RFVEQVRFPC SFVFSCSAFV  480
LLPCCSTSFP YLAESSLLQA ADIVNYSDRA GAKQKLQQKL PSLKTGSPIE SHAASVLTPY  540
AFGKLQEELV LAPQYASLLV DEGCFQVRHH TQVDGGCKVI WVPSQEHISC SCCQFEFTGI  600
LCRHVLRVLS NNNCFRIPDQ YLPARWCRVS SSSTNTFQTA TMKDKSEKIQ ILESMASTLV  660
AESIETGERL DAACQQIAVV LSRVKDLPRT TRNAIDGASN CPPDLMNLPD VEDDNGVVRF  720
TIGNSHESVA SGKLKERRPK ETVESNRKRR HCAGPCCLSV Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein