PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36412
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 388aa    MW: 43620.3 Da    PI: 9.9918
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36412genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.34.2e-07319363246
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 
                  +Y eYAk++GF vrk++ +  + +g + +r++vCsk  +r +++ 
  Ro04_G36412 319 CYVEYAKTAGFAVRKDAIRFGSSDGIVSTRRWVCSKDRTRCPTTL 363
                  69**********************************999877655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MPQSRRNQGW RRKRRRISAP RSQSSKEGSV CAKVENDATV KAVPLGAGDQ DVRISTTRAQ  60
SISAVNQRDW KLWQGYHVAV GIAAFGLHDF SITKHLQQYR SLRIMQRIFS LEAFQVYNNF  120
DRGPSDDSHF GIKRHKPRRR DFPGPEVHDR HLFHKVSSQT ASALLCQIAG LTSIATNQSL  180
KARDEILRMK RAYEASIKSK DGEISRLKRE MVSCKVKDCV QHDLGEIKNL NVTSSSCVHA  240
DGVEPFGGVI RTQVRANVEI GKDKLDIRKE GGRTGFSSSC ESSGDDDIVT DDFQSDEDGW  300
MADNLADKEC KTVEEAEVCY VEYAKTAGFA VRKDAIRFGS SDGIVSTRRW VCSKDRTRCP  360
TTLMIRFSRE KGAQSRNRRC VGLLSTLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11216RKRRR
21317KRRRI