PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36715

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

DBB

Protein Properties

Length: 239aa MW: 26319.7 Da PI: 4.4987

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36715	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Ro04_G36715 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	28.6	2.8e-09	53	86	2	35
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 + ++C+ +++k + +fC +++ l+C+dC +++H Ro04_G36715 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDDSIHL 86 789******************************4 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLESL SNKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DDSIHLANSL SANHQRFLAT GIRVALTSTC TKDAETTSLE 120 PPIHSSQQVS TKMPTSHASG FSSPWGVDDL LQLSDFESSD KKESLEFGEL EWIADMGLFG 180 EQFPQEALAA AEVPQLPVSQ SSNYMSYRPP KSNSAYKKPR IEIPDDDEEH FTVPDLGIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	1e-107	DBB family protein