PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36878
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 257aa    MW: 28876.1 Da    PI: 5.3753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36878genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
      Ro04_G36878 14 KGPWTTEEDQVLISYIQNYGHGNWRALPKHAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.91.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      Ro04_G36878  67 RGNFTREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGRAPCCEKM GLKKGPWTTE EDQVLISYIQ NYGHGNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLLKNN  120
KTTSPTCSTS NLTSQSADPE YVNFESPTRQ TSMSPQPSSS DDVSSVNNAS AATGQDMIKD  180
EKIEFNAPFP EIDDSFWSEA LSADNSGYIP LEFLEGTNDN STHPQFPVTS NIDDGMNFWY  240
DLFIRAGDGG TPELPGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-74MYB family protein