PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36928
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 197aa    MW: 22150.4 Da    PI: 9.8288
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36928genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99.1e-16114146133
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                  C++Cg t+Tp+WR+gp g  tLCnaCG++y+  
  Ro04_G36928 114 CTHCGITQTPQWRHGPLGRMTLCNACGVRYKCG 146
                  ******************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MALHGPDEFL ADVSEDRDYP GLLVPATVKL AKEEELEWQS NKDAFHAVET RMLSNAQQQN  60
HRVSASVVEA GIDKSLLRSM PARKCKKNSA QVKNKPGRLC PEDSAKVKRI ERECTHCGIT  120
QTPQWRHGPL GRMTLCNACG VRYKCGRLCP EYRPANSPTF SGKLHSNAHR KVMEMRKQKY  180
GTVSKPVNIW MPSYASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.22e-34GATA family protein