PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G37042
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 88aa    MW: 9979.06 Da    PI: 9.8218
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G37042genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP54.83.8e-172478869
          TCP  8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69
                 h k +T++g+Rd+R Rlsa++a++f+d+q+ LG+d++sk       + kp i +l ++s+++
  Ro04_G37042 24 HNKFYTSKGPRDKRFRLSAQTAIEFYDVQEHLGYDRPSK-------ATKPTIEALGDSSATH 78
                 99*************************************.......5566666665554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
NNGRYGRIVK VQGGHVDTLF DQLHNKFYTS KGPRDKRFRL SAQTAIEFYD VQEHLGYDRP  60
SKATKPTIEA LGDSSATHHE STMNNLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-21TCP family protein