PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G37250
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 170aa    MW: 19142.5 Da    PI: 4.5626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G37250genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-0886110226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++r+G CkyG++ +F+H+
  Ro04_G37250  86 GERVCLYYMRNGSCKYGSNYRFNHP 110
                  7899***************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MWQDWAKDEA AMGSGPETLS TVEKLYEQGV FDYLVFYKSQ QCTFSTLDEY VDLFLTRIDG  60
LRRRLSCPIE GENALDYSLL RETFQGERVC LYYMRNGSCK YGSNYRFNHP DPTAAGGSNP  120
PFGFDNGGPA SLQWWITVTS WSAPKSLSVT PLYVPMMMPP SQGVPSQNTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-19C3H family protein