PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01714
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 302aa    MW: 32899.4 Da    PI: 8.5793
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01714genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3942103263
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  Ro05_G01714  42 KEAALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 103
                  67899*****************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDTAQWPQGI VVKPIEEIVT NTCPKPTSAA NNLERKLARP QKEAALNCPR CNSTNTKFCY  60
YNNYSLTQPR YFCKTCRRYW TEGGSLRNIP VGGGSRKNKR SSSSSATTTS NISNNSSKRL  120
PDLIQPNQGQ DLNLGFPSNQ VFPHHQIPNI DQNSDKNNNN SSSTSTTTAT SHLSALELLT  180
GLTSRGLNSF MPMPVPNSDP NNNNSASVYT SGFPMSELMI KPTLNFSLDG LGSGYGSTLQ  240
GHVQENSGRL LFPFEDLKQV SGSGGMDHHQ QNKEHHHGGD STGYWTGMLG GGSWTEILPA  300
IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.18e-48Dof family protein