PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01777
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 373aa    MW: 41241 Da    PI: 8.2846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01777genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.41.1e-3130134199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Ro05_G01777  30 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGElGKDRL 127
                  89***************************966778999*************************************************77789999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Ro05_G01777 128 YIDWRRR 134
                  9999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MDSSPRNSDQ EATENHTATV AAPIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS  60
STNEKGLLLN FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG  120
ELGKDRLYID WRRRPDAPDP NHHHHHALHH HNFGIPPPHH YSFHRSVPWS PLLMRPPGSS  180
SAIARDHLQQ MNYSMNIHPY RNSGYSTSSG STGGGGYGYA NVMNMNPVYY LRSGGGGGGG  240
SVLPQQLHEL EGTTTSHQVG LGHLGRVNVV EPMVLESVPV VHGKVAAAGK RLRLFGVNMD  300
CPASDQSSSE ECDILSSSTT TTTTATAMAL SQQPHPSQPP LQLRLYDGTP ATTDFFNRAK  360
TSSSSSMSLD FDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-68B3 family protein