PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01835
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 247aa    MW: 27515.1 Da    PI: 7.4165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01835genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2056105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a++k++g
  Ro05_G01835  56 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALKFKG 105
                  7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSAMVSALSQ VISGSSSTNT NQNPALHQIP QQSGAVLEHD QPHQQAPDQG NVRRRHYRGV  60
RQRPWGKWAA EIRDPKKAAR VWLGTFETAE AAALAYDEAA LKFKGSKAKL NFPERVQVTA  120
ESGGYLTTQT VAHQPLISDY HHQQLAYPNI STTDQYYPHF YGSLNYGQSD ERFYYQPTLS  180
SSTATSTTSS SSPFILPMSQ AQDEDHQLQP ASSFSMPAFG SSSSISEPEY PRNNTTRNFD  240
NSQHWRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-30ERF family protein