PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01856

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 530aa MW: 57862.8 Da PI: 5.834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01856	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	346	388	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Ro05_G01856 346 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 388 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MLPRLNGVVW MDDRDERETA SWTRTAAAAV GGVGENKDEM GSLSNFKSML DVEEDWYMAN 60 NGIQGHSDVR DLTFSPSFAD PESLLLNQVD SSSSCSPSSS VFNNLDPSQV HYYLPQNPSL 120 SSLLNVVPNN PLDHGFDLGC EIGFLDNQGS SGASLMNRGG GVLPGFNDLS SNNHMQAQNL 180 CSNLQFSTTR LPQLLENSTN FSGFRGLDDT SGNALFANRS KLLRPLESFP STGAQPTLFQ 240 KRAALRKNMG GLGLEGGLVL NNFEGDKGKR DMGDENEKKR KFSGGDDVED VSFDGSGLNY 300 DSDEFTENTK LDENAKNGGN SSNANSTVTG GEHKGKKKGL PAKNLMAERR RRKKLNDRLY 360 MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINSLHNELE SLPPGSALTP TASTFHPLTP 420 TPPTLPSRIK EELCPSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL LSTMRAVDNL 480 GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD VHPEHIKAVL LDSAGFHGMI

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MLPRLNGVVW MDDRDERETA SWTRTAAAAV GGVGENKDEM GSLSNFKSML DVEEDWYMAN  60
NGIQGHSDVR DLTFSPSFAD PESLLLNQVD SSSSCSPSSS VFNNLDPSQV HYYLPQNPSL  120
SSLLNVVPNN PLDHGFDLGC EIGFLDNQGS SGASLMNRGG GVLPGFNDLS SNNHMQAQNL  180
CSNLQFSTTR LPQLLENSTN FSGFRGLDDT SGNALFANRS KLLRPLESFP STGAQPTLFQ  240
KRAALRKNMG GLGLEGGLVL NNFEGDKGKR DMGDENEKKR KFSGGDDVED VSFDGSGLNY  300
DSDEFTENTK LDENAKNGGN SSNANSTVTG GEHKGKKKGL PAKNLMAERR RRKKLNDRLY  360
MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINSLHNELE SLPPGSALTP TASTFHPLTP  420
TPPTLPSRIK EELCPSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL LSTMRAVDNL  480
GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD VHPEHIKAVL LDSAGFHGMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	354	KKKGLPAKNLMAERRRRKK
2	348	355	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-128	bHLH family protein