PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01881
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 190aa    MW: 21144.6 Da    PI: 7.7663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49141381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp      e+e yfFs++++ky++g+r+nr+t+sgyWkatg+dk+++s+ ++
  Ro05_G01881  14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCLYDPWDLPGD---LEQERYFFSNKESKYPNGNRTNRVTSSGYWKATGSDKKIVSSrRN 107
                  79****************************.89***************54...46799**********************************998677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vg kk+Lvfy+g+ap+g+ktdWvmhey+l
  Ro05_G01881 108 NIVGKKKSLVFYRGKAPTGSKTDWVMHEYSL 138
                  78***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MDKFNFVRNG MIRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCLYDPWDLP  60
GDLEQERYFF SNKESKYPNG NRTNRVTSSG YWKATGSDKK IVSSRRNNIV GKKKSLVFYR  120
GKAPTGSKTD WVMHEYSLVN NTGPTASSTE ITSTSPVSSS SSCSSCSGIT EVSSSHEAGD  180
DEEISGCTTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-73NAC family protein