PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01909
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23180.1 Da    PI: 10.4696
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01909genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.5e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   r+vtfskRrng+lKKA+ELS+LCda+va+i fs++gk+y ++s
  Ro05_G01909  9 KRIENPASRKVTFSKRRNGLLKKAFELSILCDAQVALIAFSPSGKVYQFAS 59
                 79***********************************************86 PP
2K-box52.22.6e-18871611185
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                  +a++e +++e + L++ i+nL+  +++l G +L+ L ++eL+qLe+qL++++++i sk  +++ e+ + l++k k
  Ro05_G01909  87 TATMEFWRNETEELRRSIQNLEMRLKNLAGAELSMLGMQELKQLERQLKTGIERIHSKMRRVISENHSSLKRKVK 161
                  67899*******************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MGRGKVELKR IENPASRKVT FSKRRNGLLK KAFELSILCD AQVALIAFSP SGKVYQFASH  60
DINRTIAMYR REVGLPQSSI PACCTRTATM EFWRNETEEL RRSIQNLEMR LKNLAGAELS  120
MLGMQELKQL ERQLKTGIER IHSKMRRVIS ENHSSLKRKV KLDELDQYGD ASCMITLGAS  180
TAGFFVFVRI DIAAVMPTVG LEKAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.16e-44MIKC_MADS family protein