PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01921

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YC

Protein Properties

Length: 274aa MW: 29588.2 Da PI: 4.7558

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.7	5.3e-56	50	154	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi Ro05_G01921 50 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 147 89***998899********************************************************************************* PP NF-YC 96 vprdelk 102 vprde+k Ro05_G01921 148 VPRDEIK 154 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MDNNNNNPNA ITSQQAQSAT YPPNQAPPPP PPSSVAAPPF HHLLQQQQQQ LQMFWTYQRQ 60 EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPVLFA KACELFILEL TIRSWLHAEE 120 NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKDEPGLG VGVGMVGATA SGVPYYYPPI 180 GQPAGAPAGM MIGRPAMDPT GVYAQPPSQA WQSVWQTAAD DGSYGSGGSS GQANLDGQRF 240 SSLTETIATT SSYTELGDAG RPPSASGLLA GGVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	129	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-88	NF-YC family protein