PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03220
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 91aa    MW: 10362.7 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03220genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0715541554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +i++   +L+ llP+  + +++ +s ++iLe+++ YIk L
  Ro05_G03220 15 EIKELVVKLQALLPQHNHRRNTTVSASTILEETCSYIKRL 54
                 67888889*******6699*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MSSQRTRASQ PTENEIKELV VKLQALLPQH NHRRNTTVSA STILEETCSY IKRLHKEVGD  60
LSQRLSQLLH DSADIAEVDE ELITRLLSNI N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.14e-20bHLH family protein