PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03258

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 441aa MW: 48033.9 Da PI: 7.1355

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03258	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	121	180	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Ro05_G03258 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKGCQRYWTAGGTMRNVPVGAGRRKNKNS 180 7899*****************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MLQETKDPAI KLFGMKIPLP AGADDGDFGF TRPGEKQVED EEEEEESETE KDSPSTKATE 60 SIELDGCSRP KTEDSASVEM LPDSSVNPKT PSIDDESKKS KAHAKTENDA TNSQEKTLKK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKGCQRYWT AGGTMRNVPV GAGRRKNKNS 180 AASHYRQITI SEALQAARIE APNGRVLSFG VDAPVCDSMA SVLHLADNKK VLNGTTRQSE 240 ELVFPAPCKG RENGDDCSIA SSVTASKPQT QNANGFSSQI PCLPGVPWPY QWNSAVPPPA 300 FVPPGIPIPV FPAAYWNCGV PFQVPVPWFS PSPNQKSPTL GKHSREGPEV HLEKEEPPKQ 360 KNGCVLVPKT LRIDDPSEAA KSSIWTTLGI KNDSISSGKG LFKAFQSQSK GDQKKHVPET 420 SPALLANPAA LSRSLNFHES T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MLQETKDPAI KLFGMKIPLP AGADDGDFGF TRPGEKQVED EEEEEESETE KDSPSTKATE  60
SIELDGCSRP KTEDSASVEM LPDSSVNPKT PSIDDESKKS KAHAKTENDA TNSQEKTLKK  120
PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKGCQRYWT AGGTMRNVPV GAGRRKNKNS  180
AASHYRQITI SEALQAARIE APNGRVLSFG VDAPVCDSMA SVLHLADNKK VLNGTTRQSE  240
ELVFPAPCKG RENGDDCSIA SSVTASKPQT QNANGFSSQI PCLPGVPWPY QWNSAVPPPA  300
FVPPGIPIPV FPAAYWNCGV PFQVPVPWFS PSPNQKSPTL GKHSREGPEV HLEKEEPPKQ  360
KNGCVLVPKT LRIDDPSEAA KSSIWTTLGI KNDSISSGKG LFKAFQSQSK GDQKKHVPET  420
SPALLANPAA LSRSLNFHES T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	Dof family protein