PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03300

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 392aa MW: 43642 Da PI: 7.5485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03300	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	184	229	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ L++l+P+a K +Ka++L ++++Y+ +Lq Ro05_G03300 184 HNQSERKRRDRINQKMKALQRLVPNA-----SKSDKASMLDEVIKYLEQLQ 229 9**********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MSEGVLSNYD VTELKLENGH LAMRGLGGFS STSPAMPTWS NRACDTLESI VHQATCHQVP 60 ETNLSSMVSS SGGTWTDDSG QPPLTPGWIK KRTRSDSDHD GKNISSTTST TSNVLHKKQA 120 EYQRDNDTTL NTWASFESPK NKSNDDDSTG HEGLENQDEG RETTKGDESS RSRSTRPRRV 180 AAIHNQSERK RRDRINQKMK ALQRLVPNAS KSDKASMLDE VIKYLEQLQA QVLMMSSMRN 240 NMHPHMNLMM PLGMQQQQQH QEQQHLHQMS VLARMGMTPV VPGALGMGMR MGMGMLDISN 300 MARMTHPQQP LIHPTPASFL PPFMVPQLMQ PKPDHPAAVA TNANSDPLAD PYCALLAQQQ 360 SMNMDLFNRM AALYRQQVDH QTTASSPSQS NH

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MSEGVLSNYD VTELKLENGH LAMRGLGGFS STSPAMPTWS NRACDTLESI VHQATCHQVP  60
ETNLSSMVSS SGGTWTDDSG QPPLTPGWIK KRTRSDSDHD GKNISSTTST TSNVLHKKQA  120
EYQRDNDTTL NTWASFESPK NKSNDDDSTG HEGLENQDEG RETTKGDESS RSRSTRPRRV  180
AAIHNQSERK RRDRINQKMK ALQRLVPNAS KSDKASMLDE VIKYLEQLQA QVLMMSSMRN  240
NMHPHMNLMM PLGMQQQQQH QEQQHLHQMS VLARMGMTPV VPGALGMGMR MGMGMLDISN  300
MARMTHPQQP LIHPTPASFL PPFMVPQLMQ PKPDHPAAVA TNANSDPLAD PYCALLAQQQ  360
SMNMDLFNRM AALYRQQVDH QTTASSPSQS NH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	193	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-32	bHLH family protein