PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03305
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 311aa    MW: 35436.2 Da    PI: 7.5237
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03305genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-16179276499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    ++s + +++ ++++ +fa+eh  k+ +s ++tl+ +s r W  +++++ +sg+     v ++GWk F ++n L+e+D++vF+++  +e++l v++f
  Ro05_G03305 179 LKMTSTYIQRSGVYISASFAKEHLCKPGTSCDVTLQISSERFWIAQCTVSENSGHriyaRVTGAGWKAFKEDNCLQERDVCVFEVI--EERTLEVSIF 274
                  567888999999***********77888999****************9977777667666677*********************76..57778****9 PP

                  -S CS
           B3  98 rk 99 
                  r+
  Ro05_G03305 275 RA 276
                  96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MATTSRPIKT RSLPADSRSF CLKILTADDL RNGKELPETA VTEYGNCMAD YILLRVPNCG  60
AFWPIEVKRS TRGGRMWLHK GWPEFASFYS LEQGYFALFS YEGEHSHFQA RIFHWNDMEI  120
DYPIRGSAGF DGRPKRKANR DMPPVHLEAR AGSISSGSWA DEHQNDLSSF KSDKPFLMLK  180
MTSTYIQRSG VYISASFAKE HLCKPGTSCD VTLQISSERF WIAQCTVSEN SGHRIYARVT  240
GAGWKAFKED NCLQERDVCV FEVIEERTLE VSIFRAKDNY TSGVEALAQT FLLSGIIVTV  300
DLLLKWFHHV W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-14B3 family protein