PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03319

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 177aa MW: 20475.9 Da PI: 6.6324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03319	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.8	9.2e-32	15	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgyWka 85 lp+GfrF Ptdeelv++yL +k++ + ++++++i+e+d y+ +P++L +++++e+ew+fF+++d +y +g+ ++ a g+Wk Ro05_G03319 15 LPVGFRFMPTDEELVTHYLMNKASYRAVPVADAIQEIDatqFYSNHPKNLV-TFSNGEREWFFFIHEDDEYFSGSSSSHAqrrrnvrevgNGLGFWKP 111 79***********************999998888874447888*6.788899*********977733333223334444444899* PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +g+++++++++g + +k L++++g +++k+++t+W m ey+l Ro05_G03319 112 SGSENPIYNEDGDVFATKIFLTYFSGscHSNKPKRTHWKMVEYHL 156 **********************7755889999********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MEAQKGVVAM SSDLLPVGFR FMPTDEELVT HYLMNKASYR AVPVADAIQE IDATQFYSNH 60 PKNLVTFSNG EREWFFFIHE DDEYFSGSSS SHAQRRRNVR EVGNGLGFWK PSGSENPIYN 120 EDGDVFATKI FLTYFSGSCH SNKPKRTHWK MVEYHLQIRT EWVVLGRIQR GMEYTGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-19	NAC family protein