PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03376
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 312aa    MW: 34000.2 Da    PI: 7.4699
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1239.8e-392988261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s
  Ro05_G03376 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 88
                 57899****************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MQDIQSIGGR FFGGAGGGDR RLRPHHNQNH QALKCPRCDS LNTKFCYYNN YNLSQPRHFC  60
KSCRRYWTKG GVLRNVPVGG GCRKTKRSKP KSSSSPTSPP PQQQDSERKA SSNSSSESSS  120
LTAANTATGT ATEAVSAPSS TSSASNLLNI QDSKFFVPQS GANANFEATA SMLEQGTEIG  180
MFSEIGSFTS LITASNDVPF GFTNIGDISV SPFRLNQQTQ GQQHQIQQNQ WAQHSENQEL  240
KMQEITGGML DQTAQVDLSV FQNRTNGGGG FGTLDWQPAG DQGLFDLPNT VDQAYWCQGQ  300
WTDQDPPSHY IP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.13e-33Dof family protein