PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03424
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 217aa    MW: 24459.3 Da    PI: 8.2455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03424genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.81.9e-164088355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +grWvAeI+d s+   + r +lg+f+ aeeAa a+++a++ l+g
  Ro05_G03424 40 FLGVRQRP-SGRWVAEIKDSSQ---NLRLWLGTFDRAEEAALAYDKAARLLRG 88
                 67******.7*********543...5***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MDSLESSSTP NQKETLRENK ENGCTAIKVP KKAKIDGRRF LGVRQRPSGR WVAEIKDSSQ  60
NLRLWLGTFD RAEEAALAYD KAARLLRGRN AKTNFPPSHH DQQHGMTCFM NTHEENCSIL  120
RKNPRLYQLL QHAIMKNHAR SSTTIMGKGA QFDSVNDDFD TLVEETIVCS SSTSTASGVQ  180
DHDDHHCALS FGTSKLLLSV VRESSHDDQR EKKGYQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16ERF family protein