PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03470
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 283aa    MW: 30730.2 Da    PI: 5.7992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03470genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10163223455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +           +s+K   Ka +L + ++YI+sLq
  Ro05_G03470 163 SHSLAERARREKISERMKILQDLVPGCNkyvslilvYISSEKvIGKALVLDEIINYIQSLQ 223
                  8*************************888*******9999999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MNSGFCGKMD PPLINESSFS AANPAAYSLA EIWPFGGEPG GLGLRMGNLG GGLGESSGNR  60
DGSLEESTVT EQSGGGGRKR KDVSSEDESS KIVSTSSANG LKDSRGKRTK LDGSRNENGN  120
SKAEVETNSV AGDKPDEQLT KPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK  180
ILQDLVPGCN KYVSLILVYI SSEKVIGKAL VLDEIINYIQ SLQRQVEFLS LKLETVNSRV  240
NMNPTIEAFP SKDSFDAAGL LFGPHTPREY AQGSQPEWLH MQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.16e-77bHLH family protein