PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03474

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 344aa MW: 38033.9 Da PI: 5.4726

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03474	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	16	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd +++d G g+W++++++ g++R++k+c+ rw +y Ro05_G03474 16 KGTWTEEEDAKILDQ----GIGNWSSVPKKAGLNRCGKSCRPRWSNY 58 799********95....9999********************99 PP
2	Myb_DNA-binding	45.8	1.4e-14	65	108	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +T++E+el+v++++ G++ W+ Ia+ ++ gRt++++k +w++ Ro05_G03474 65 RETFTPQEEELIVRLHATIGSR-WAIIAQQLP-GRTDNDVKIHWNT 108 678*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRPPGCCDK LINVKKGTWT EEEDAKILDQ GIGNWSSVPK KAGLNRCGKS CRPRWSNYVR 60 PNLKRETFTP QEEELIVRLH ATIGSRWAII AQQLPGRTDN DVKIHWNTKL KKKLSEMGID 120 PVTHKPFSQI LADYGNIGGL PSSGMRIGIG ASLNKDLKNA MLMKSEPYTQ GLSNLNSNHL 180 VATTKIKPLQ ATSSGKYDYY QPYDLLTQLQ AMKYVTEVSN STTNTNTNPA TSPLNFYSEC 240 SLSSSSSSTC SSAAAQDKSA LAFGWSDFLL EEAFAPTEAT MQNDIAEFSS KDILNQAQTA 300 NVGMSMSSNE ADPCDTSFVE AMMAKENDLF LEFPELLLEE PFYY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRPPGCCDK LINVKKGTWT EEEDAKILDQ GIGNWSSVPK KAGLNRCGKS CRPRWSNYVR  60
PNLKRETFTP QEEELIVRLH ATIGSRWAII AQQLPGRTDN DVKIHWNTKL KKKLSEMGID  120
PVTHKPFSQI LADYGNIGGL PSSGMRIGIG ASLNKDLKNA MLMKSEPYTQ GLSNLNSNHL  180
VATTKIKPLQ ATSSGKYDYY QPYDLLTQLQ AMKYVTEVSN STTNTNTNPA TSPLNFYSEC  240
SLSSSSSSTC SSAAAQDKSA LAFGWSDFLL EEAFAPTEAT MQNDIAEFSS KDILNQAQTA  300
NVGMSMSSNE ADPCDTSFVE AMMAKENDLF LEFPELLLEE PFYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-69	MYB family protein