PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03589

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 389aa MW: 44208.1 Da PI: 8.1722

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03589	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g++R++k+c++rw +yl Ro05_G03589 13 KGAWSKQEDQKLIDYIRKHGEGCWNSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	51.5	2.4e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Ro05_G03589 66 RGSFGEDEEDLIIRLHTLLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 899*****************.*****.**********986 PP
3	Myb_DNA-binding	45.2	2.2e-14	212	259	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l ++++++G g+W++ + g+ R++k+c++rw +yl Ro05_G03589 212 KGAWSKQEDVKLTQYIQKHGEGSWRSLPVAAGLLRCGKSCRLRWVNYL 259 79****************************99**********97 PP
4	Myb_DNA-binding	52.8	8.9e-17	265	310	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Ro05_G03589 265 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 310 899*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MRKPCCEKTE TTKGAWSKQE DQKLIDYIRK HGEGCWNSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGSFG EDEEDLIIRL HTLLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLPIMDT 120 TLLPPNKPHA SNHAPNDKLV KYFNDIDDDV DEVVDDEVST DSVNTGNVNS NPDRISSCLA 180 PDLNLDLTLS IMSTVNFSSM RKPCCEKKMT NKGAWSKQED VKLTQYIQKH GEGSWRSLPV 240 AAGLLRCGKS CRLRWVNYLR PDLKRGNFGE DEEDLIIKLH ALLGNRWSLI AGRLPGRTDN 300 EVKNYWNTHL RRKLIHLGID PNNHRIGHNI GISKINHPCK SENSQAHNDD EDVYENPLLD 360 STSSGLESNT SCTLPDLNLD LTIGLPWSL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MRKPCCEKTE TTKGAWSKQE DQKLIDYIRK HGEGCWNSLP KAAGLRRCGK SCRLRWINYL  60
RPDLKRGSFG EDEEDLIIRL HTLLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLPIMDT  120
TLLPPNKPHA SNHAPNDKLV KYFNDIDDDV DEVVDDEVST DSVNTGNVNS NPDRISSCLA  180
PDLNLDLTLS IMSTVNFSSM RKPCCEKKMT NKGAWSKQED VKLTQYIQKH GEGSWRSLPV  240
AAGLLRCGKS CRLRWVNYLR PDLKRGNFGE DEEDLIIKLH ALLGNRWSLI AGRLPGRTDN  300
EVKNYWNTHL RRKLIHLGID PNNHRIGHNI GISKINHPCK SENSQAHNDD EDVYENPLLD  360
STSSGLESNT SCTLPDLNLD LTIGLPWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-73	MYB family protein