PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03659
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 223aa    MW: 24665.4 Da    PI: 8.6074
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03659genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.44e-29960457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  +Y+eCl+NhAaslG++a+DGCgEf+ +  +++++ +l+CaACgCHRnFHRr +
  Ro05_G03659  9 DVYRECLRNHAASLGSYATDGCGEFTLD--DTSSPGGLQCAACGCHRNFHRRVT 60
                 58*************************8..5578******************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEGENTTNDV YRECLRNHAA SLGSYATDGC GEFTLDDTSS PGGLQCAACG CHRNFHRRVT  60
YAPGVGRSSG GGGTTHHRVI SRDLHHEMMT SQELIDYNVG SGAARQMMVV ESPDSGDRSG  120
SGRKRFRSKF TAEQKEKMLA FAEKLGWKLQ RKDLEDEIER FCRSIGVSRQ VFKVWMHNHK  180
NLSSSSSAST TANASSLTTQ WMFNLDFIVK SNPNGSKAWA WGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.11e-32ZF-HD family protein